I figured you'd have a lot of comments, so I capped this one. You should really read this.
For your rational response to the amputees question, you said science supported the rational answer.
What experiment has been done to show that God is imaginary, or that there isn't a God performing miracles by modifying chaos?
I mean, this is an insult to science. I love science, and know that it is irrefutable.
Watch this and it will transform your world- that is if you are an intelligent person.