I didn't get to watch all of it, but I did watch some to 1/2 of it. From what I have seen, I thought it did a good job of disproving God, or at least the Christian God.
You notice how they try to change up everything to validate the story and scientifically prove a story, but in them trying to prove the story, even if they were correct, they were showing off that their God had absolutely nothing to do with the story at hand, thus making their God, non-existent, and from their own mouths never the less.
In addition, until they can actually find the Ark of the Covenant, they have no room to talk to use it as evidence to prove of a God.
I at least did enjoy the honest Truth of the Church in what they did to the Scientists of old like Galileo and how the church had to 180 everything because they came to find out that Galileo was indeed correct. That being said, you got to love the comment about Christianity not being anti-science despite the history that they talked about and what they did to those like Galileo who were correct in their assertions.